Quick Start

Get started with ProtSpace - no installation required.

Try ProtSpace Now

1. Visit the ProtSpace Explore Page
2. Drag & drop a .parquetbundle file onto the scatterplot, or click the Import button
3. Start exploring your protein embeddings!

Don't have data yet?

Download example datasets from the data folder on GitHub, or generate your own using the Google Colab notebook.

What Can You Do?

• Visualize protein embeddings in 2D using PCA, UMAP, t-SNE
• Color points by biological annotations (taxonomy, family, function, etc.)
• Filter and isolate specific protein groups
• Search for specific proteins by ID
• View 3D protein structures from AlphaFold
• Export images (PNG, PDF), data (JSON), and protein IDs

What's Next?

• What is ProtSpace? - Learn about protein embedding visualization
• Prepare Your Data - Generate .parquetbundle files using Google Colab
• Using the Explore Page - Learn all the features of the visualization interface